松井郁夫(Ikuo Matsui)の代表的なバイオサイエンス研究論文

Original Paper:

1)Yokoyama H., and Matsui I. “The Lipid Raft Markers Stomatin, Prohibitin, Flotillin, and HflK/C (SPFH)-domain Proteins Form an Operon With NfeD Proteins and Function With Apolar Polyisoprenoid Lipids” (2020) Crit. Rev. Microbiol., 46, 38-48.

2)Kondo Y., Yokoyama H., Matsui I., and Miyazaki S.. “Molecular modeling and simulation of human stomatin and predictions for its membrane association” (2018) J. Data Min. Genomics Proteomics, 9, 1000216.

3)Yokoyama H, Matsui I. “Crystal structure of the stomatin operon partner protein from Pyrococcus horikoshii indicates the formation of a multimeric assembly” (2014) FEBS Open Bio. 4, 804–812.

4)Marguet E., Gaudin M., Gauliard E., Fourquaux I., le Blond du Plouy S., Matsui I., and Forterre P. “Membrane vesicles, nanopods and/or nanotubes produced by hyperthermophilic archaea of the genus Thermococcus ” (2013) Biochem. Soc. Trans., 41, 436-442.

5)Matsui I., Matsui E., Yamasaki K., and Yokoyama H. “Domain Structures and Inter-Domain Interactions Defining the Holoenzyme Architecture of Archaeal D-Family DNA Polymerase” (2013) Life, 3, 375-385.

6)Yokoyama H., Matsui E., Hiramoto K., Forterre P., and Matsui I., “Clustering of OB-fold domains of the partner protease complexed with trimeric stomatin from Thermococcales” (2013) Biochimie, 95, 1494–1501.

7) Yokoyama H., Takizawa N., Kobayashi D., Matsui I., and Fujii S. “Crystal structure of a membrane stomatin-specific protease in complex with a substrate peptide” (2012) Biochemistry, 51, 3872–3880.

8) Matsui I, Urushibata Y, Shen Y, Matsui E, Yokoyama H “Novel structure of an N-terminal domain that is crucial for the dimeric assembly and DNA-binding of an archaeal DNA polymerase D large subunit from Pyrococcus horikoshii” (2011) FEBS Lett., 585, 452-458.

9) Yamasaki K, Urushibata Y, Yamasaki T, Arisaka F, and Matsui I. “Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases” (2010) FEBS Lett., 584, 3370-3375.

10) Kuwahara, Y., Unzai, S., Nagata, T., Hiroaki, Y., Yokoyama, H., Matsui, I., Ikegami, T., Fujiyoshi, Y., and Hiroaki, H. “Unusual thermal disassembly of the SPFH domain oligomer from Pyrococcus horikoshii” (2009) Biophys. J., 97, 2034-2043.

11) Kuwahara, Y., Ohno, A., Yokoyama, H., Matsui, I., Tochio, H., Shirakawa, M., and Hiroaki, H. ”The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold” (2008) Protein Sci., 17, 1915-1924.

12) Y. Urushibata, S. Ebisu, and I. Matsui “A thermostable dolichol phosphoryl mannose synthase responsible for glycoconjugate synthesis of the hyperthermophilic archaeon Pyrococcus horikoshii” (2008) Extremophiles, 12, 665-676.

13) H. Yokoyama, S. Hamamatsu, S. Fujii, and I. Matsui “Novel dimer structure of a membrane-bound protease with a catalytic Ser-Lys dyad and its linkage to stomatin” (2008) J. Synchrotron Radiat. 15, 254-257. 

14) H. Yokoyama, S. Fujii, and I. Matsui “Crystal structure of a core domain of stomatin from Pyrococcus horikoshii Illustrates a novel trimeric and coiled-coil fold” (2008) J. Mol. Biol., 376, 868-878.

15) I. Matsui and K. Harata “Implication for buried polar contacts and ion-pairs in hyperthermostable enzymes” (2007) FEBS J., 274, 4012-4022.

16) N. Ito, I. Matsui, and E. Matsui “Molecular basis for the subunit assembly of the primase from an archaeon Pyrococcus horikoshii” (2007) FEBS J., 274, 1340-1351.

17) H. Sawai, J. Nagashima, M. Kuwahara, T. Tamura, and I. Matsui “Difference in substrate specificity of C(5)-substituted or C(5)-unsubstituted pyrimidine nucleotides by DNA polymerases from thermophilic bacteria, archaea, and phages”(2007) CHEMISTRY & BIODIVERSITY, 4, 1979-1995.

18) H. Yokoyama, E. Matsui, T. Akiba, K. Harata, and I. Matsui “Molecular structure of a novel membrane protease specific for a stomatin homolog from the hyperthermophilic archaeon Pyrococcus horikoshii”(2006) J. Mol. Biol., 358, 1152-1164.

19) G. Perugino, P. Falcicchio, M. M. Corsaro, I. Matsui, M. Parrilli, M. Rossi, and M. Moracci “Preparation of a glycosynthase from the beta-glycosidase of the hyperthermophilic Archaeon Pyrococcus horikoshii” (2006) Biocatalysis and Biotransformation, 24, 23-29.

20) H. Yokoyama and I. Matsui “A novel thermostable membrane protease forming an operon with a stomatin homolog from hyperthermophilic archaeon Pyrococcus horikoshii ” (2005) J. Biol. Chem., 280, 6588-6594.

21) X-F. Tang, Y. Shen, E. Matsui, and I. Matsui “Domain topology of the DNA polymerase D complex from a hyperthermophilic archaeon Pyrococcus horikoshii” (2004) Biochemistry, 43, 11818-11827.

22) T. Akiba, M. Nishio, I. Matsui, and K. Harata “X-ray structure of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii” (2004) Proteins, 57, 422-431.

23) E. Matsui, J. Abe, H. Yokoyama, and I. Matsui “Aromatic Residues Located Closely to the Active Center are Essential for the Catalytic Reaction of FEN-1 from Hyperthermophilic Archaeon Pyrococcus horikoshii “ (2004) J. Biol. Chem., 279, 16687-16696. 

24) Y. Shen, X-F. Tang, E. Matsui, and I. Matsui “A 21-aa peptide from the cysteine cluster II of the family D DNA polymerase from Pyrococcus horikoshii stimulates its nuclease activity which is Mre11-like and prefers manganese ion as the co-factor“ (2004) Nucleic Acids Res., 32, 158-168.

25) Weng L., Feng Y., Ji X., Cao S., Kosugi Y., and Matsui I. “Recombinant expression and characterization of an extremely hyperthermophilic archaeal histone from Pyrococcus horikoshii OT3” (2004) Protein Expr. Purif.. 33, 145-152.

26) Y. Shen, X.-F. Tang, E. Matsui, and I. Matsui “Subunit interaction and regulation of activity through terminal domains of the family D DNA polymerase from Pyrococcus horikoshii“ (2004) Biochem. Soci. Trans., 32(Pt 2), 245-249.

27) E. Matsui, M. Nishio, H. Yokoyama, K. Harata, S. Darnis, and I. Matsui “Distinct Domain Functions Regulating De Novo DNA Synthesis of Thermostable DNA Primase from Hyperthermophile Pyrococcus horikoshii“ (2003) Biochemistry, 42, 14968-14976.

28) Y. Shen, X-F. Tang, and I. Matsui “Subunit Interaction and Regulation of Activity through Terminal Domains of the Family D DNA Polymerase from Pyrococcus horikoshii”  (2003) J. Biol. Chem., 278, 21247-21257.  

29) H. Higashibata, H. Kikuchi, Y. Kawarabayasi, and I. Matsui  ”Helicase and Nuclease Activities of Hyperthermophile Pyrococcus horikoshii Dna2 Inhibited by Substrates with RNA Segments at 5’-end” (2003) J. Biol. Chem., 278, 15983-15990.

30) Wang S., Feng Y., Zhang Z., Zheng B., Li N., Cao S., Matsui I., and Kosugi Y. “Heat effect on the structure and activity of the recombinant glutamate dehydrogenase from a hyperthermophilic archaeon Pyrococcus horikoshii” (2003) Arch. Biochem. Biophys., 411, 56-62

31) E. Matsui, K. V. Musti, J. Abe, K. Yamasaki, I. Matsui, and K. Harata “Molecular structure and novel DNA binding sites located in loops of flap endonuclease-1 from Pyrococcus horikoshii” (2002) J. Biol. Chem., 277, 37840-37847.

32) Ishikawa K, Matsui I, Payan F, Cambillau C, Ishida H, Kawarabayasi Y, Kikuchi H, Roussel A “A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure” (2002) Structure (Camb).  10, 877-86

33) Y. Shen, K. Musti, M. Hiramoto, H. Kikuchi, Y. Kawarabayasi, and I. Matsui “Invariant Asp1122 and Asp1124 are essential residues for polymerization catalysis of family D DNA polymerase from Pyrococcus horikoshii” (2001) J. Biol. Chem. 276, 27376-27383

34) R. Zheng, E. Matsui, Y. Shen, K. Musti, Y. Feng, S. Darnis, H. Kikuchi, Y. Kawarabayasi, K. Harata, and I. Matsui  “The novel function of a short region K253xxRxxxD259 conserved in the exonuclease domain of hyperthermostable DNA polymerase from Pyrococcus horikoshii” (2001) Extremophiles , 5, 111-117

35) Ishikawa K, Ishida H, Matsui I, Kawarabayasi Y, Kikuchi H “Novel bifunctional hyperthermostable carboxypeptidase/aminoacylase from Pyrococcus horikoshii OT3” (2001) Appl. Environ. Microbiol. 67, 673-679.

36) H. Ura, K. Harata, I. Matsui, and S. Kuramitsu “Temperature dependence of the enzyme-substrate recognition mechanism” (2001) J. Biochem. (Tokyo) 129, 173-178.

37) I. Matsui, Y. Sakai, E. Matsui, H. Kikuchi, Y. Kawarabayashi, and K. Honda. "Novel Substrate Specificity of a Membrane-bound beta-Glycosidase from the Hyperthermophilic Archaeon Pyrococcus horikoshii" (2000) FEBS Lett., 467, 195-200

38) I. Matsui, E. Matsui, Y. Sakai,  H. Kikuchi, Y. Kawarabayashi, H. Ura, S. Kawaguchi, S. Kuramitsu, and K. Harata. "The Molecular Structure of Hyperthermostable Aromatic Aminotransferase with Novel Substrate Specificity from Pyrococcus horikoshii" (2000) J. Biol. Chem., 275, 4871-4879

39) E. Matsui, S. Kawasaki,  H. Ishida, K. Ishikawa, Y. Kosugi, H. Kikuchi, Y. Kawarabayashi, and I. Matsui. "Thermostable Flap Endonuclease from the Archaeon, Pyrococcus horikoshii, Cleaves the Replication Fork-like Structure Endo/Exo nucleolitically" (1999) J. Biol. Chem., 274, 18297-18309

40) K. Ishikawa,  H. Ishida, Y. Koyama, Y. Kosugi, E. Matsui, S. Kawasaki, Y. Kawarabayashi, and I. Matsui "Acylamino Acid-releasing Enzyme from the Thermophilic Archaeon Pyrococcus horikoshii" (1998) J. Biol. Chem.,  273, 17726-17731

41) Matsui, I. and Svensson B. "Improved Activity and Modulated Action Pattern Obtained by Random Mutagenesis at the Fourth  Loop Involved in Substrate Binding to the Catalytic -Barrel Domain of Barley alpha-Amylase1"(1997) J. Biol. Chem., 272, 22456-22463

42) Ishikawa K, Matsui I, and Honda K “Optimum pH control mechanism for porcine pancreatic alpha-amylase” (1995) Biosci. Biotechnol. Biochem. 59,1175-6

43) Matsui I., Yoneda S., Ishikawa K., Miyairi S., Fukui S., Umeyama H., and Honda K. “Roles of the Aromatic Residues Conserved in the Active Center of Saccharomycopsis alpha-Amylase for Transglycosylation and Hydrolysis Activity” (1994) Biochemistry 33, 451-458.

44) Ishikawa K., Matsui I., Honda K., Kobayashi S., and Nakatani H. "Substrate Recognition at the Binding Site and Roles of Histidine Residues on the Catalytic Mechanism in Mammalian  Pancreatic alpha-Amylase" (1993) Biochemistry 32, 6259-6265.

45) Matsui I., Ishikawa K., Miyairi S., Fukui S., and Honda K. "A Mutant alpha-Amylase with Enhanced Activity Specific for the Short Substrates" (1992) FEBS Letters 310, 216-218.

46) Ishikawa K., Matsui I., Honda K., and Nakatani H. "Multi-function Roles of a Histidine Residue in Mammalian  Pancreatic alpha-Amylase" (1992) Biochem. Biophys. Res. Commun. 183 (1) 289-291.

47) Matsui I., Ishikawa K., Miyairi S., Fukui S., and Honda K. "Alteration of Bond-cleavage Pattern in the Hydrolysis Catalyzed by Saccharomycopsis alpha-Amylase Altered by Site-directed Mutagenesis" (1992) Biochemistry 31, 5232-5236.

48) Miyairi S., Ichimura T., Matsui I., and Honda K. “N-terminal amino acid sequence of the thermophilic cyanobacterium Synechococcus elongatus” (1992) Biosci. Biotechnol. Biochem. 56, 328-329.

49) Ishikawa K., Matsui I., Honda K.,Kobayashi S., and Nakatani H. "The pH Dependence of the Action Pattern in Porcine Pancreatic alpha-Amylase-catalyzed Reaction for Maltooligosaccharide Substrates" (1991) Arch. Biochem. Biophys. 289, (1) 124-129.

50) Matsui I., Ishikawa K., Miyairi S., Fukui S., and Honda K. "An Increase in the Transglycosylation activity of Saccharomycopsis alpha-Amylase Altered by Site-directed Mutagenesis" (1991) Biochim. Biophys. Acta 1077, 416-419.

51) Matsui I., Ishikawa K., Matsui E., Miyairi S., Fukui S., and Honda K. "Subsite Structure of Saccharomycopsis alpha-Amylase" (1991) J. Biochem. 109, 566-569. 

52) Ishikawa K., Matsui I., Honda K., and Nakatani H. "Substrate-Dependent Shift of Optimum pH in Porcine Pancreatic alpha-Amylase-catalyzed Reactions" (1990) Biochemistry 29, 7119-7123.

53) Matsui I., Matsui E., Ishikawa K., Miyairi S., and Honda K. "The Enzymatic and Molecular Characteristics of Saccharomycopsis alpha-Amylase Secreted from Saccharomyces cerevisiae" (1990) Agric. Biol. Chem. 54, 2009-2015.

54) Uemura H., Shiba T., Machida M., Matsui I., Jigami Y., and Tanaka H. "A Positive Regulatory Sequence of the Saccharomyces cerevisiae ENO 1 Gene" (1987) J. Biochem. 102, 181-189.

55) Matsui I. and Oishi K. "Carbohydrate-Binding Properties of L-Fucose, D-Mannose Specific Lectin (SFL 100-2) Particles Produced by Streptomyces sp." (1986) J. Biochem. 100, 115-121.

56) Matsui I., Oishi K., Kanaya K., and Baba, N. "The Morphology of L-Fucose, D-Mannose Specific Lectin (SFL 100-2) Produced by Streptomyces No. 100-2" (1985) J. Biochem. 97. 399-408.

57) Matsui I., Kameyama T., Oishi K., and Aida K. "Purification and Properties of a New L-Fucose-specific Lectin Produced by Streptomyces No. 100-2" (1982) Agric. Biol. Chem. 46, 833-835.

58) Matsui I., Murakawa S., and Takahashi T. "Attempt of Microbial Mutagen Screening with Rec-assay" (1980) Agric. Biol. Chem. 44, 919-920.